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Objective To investigate the morphological variation of Oncomelania hupensis shells in Yunnan Province, so as to provide insights into the understanding of O. hupensis genetic evolution and control. Methods According to the O. hupensis density, geographical location, altitude, water system and environmental type, 12 administrative villages were sampled from 10 schistosomiasis-endemic counties (districts) in 3 prefectures (cities) of Yunnan Province as snail collection sites. From December 2021 to January 2022, about 200 snails were collected from each collection site, among which thirty adult snails (6 to 7 spirals) were randomly selected from each site, and the 11 morphological indexes of snail shells were measured and subjected to cluster analysis and principal component analysis. Results Of O. hupensis snails from 12 localities of Yunnan Province, the longest shell (7.33 mm) was detected in snails from Yongle Village, Eryuan County, with the shortest (4.68 mm) in Dongyuan Village, Gucheng District, and the largest angle of apex (59.47°) was measured in snails from Caizhuang Village, Midu County, with the smallest (41.40°) in Qiandian Village, Eryuan County. The mean coefficient of variation was 9.075% among O. hupensis snails from 12 localities of Yunnan Province, with the largest coefficient of variation seen in the thickness of the labra brim (29.809%). Among O. hupensis snails from 12 localities of Yunnan Province, the mean Euclidean distance was 2.26, with the shortest Euclidean distance seen between O. hupensis snails from Qiandian Village of Eryuan County and Wuxing Village of Dali City (0.26), and the largest found between O. hupensis snails from Caizhuang Village of Midu County and Cangling Village of Chuxiong County (8.17). Cluster analysis and principal component analysis classified O. hupensis snails from 12 localities of Yunnan Province into three categories, including the O. hupensis snail samples from Caizhuang Village of Midu County, O. hupensis snail samples from Cangling Village of Chuxiong County, and O. hupensis snail samples from Qiandian Village of Eryuan County, Wuxing Village of Dali City, Yangwu Village of Yongsheng County, Xiaoqiao Village of Xiangyun County, Yongle Village of Eryuan County, Xiaocen Village of Dali City, Anding Village of Nanjian County, Dongyuan Village of Gucheng District, Lianyi Village of Heqing County, and Dianzhong Village of Weishan County. The variations in these three categories of snail samples were mainly measured in the principal component 2 related to the angle of apex and the thickness of the labra brim. Conclusions The variations in the Euclidean distance and morphological features of shells of O. hupensis from 12 localities of Yunnan Province gradually rise with the decrease in the latitude of the collection sites. The angle of apex is an indicator for the growth of O. hupensis whorl.
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In this article, based on z-curve theory and position weight matrix (PWM), a model for nucleosome sequences was constructed. Nucleosome sequence dataset was transformed into three-dimensional coordinates, PWM of the nucleosome sequences was calculated and the similarity score was obtained. After integrating them, a nucleosome feature model based on the comprehensive DNA sequences was obtained and named CSeqFM. We calculated the Euclidean distance between nucleosome sequence candidates or linker sequences and CSeqFM model as the feature dataset, and put the feature datasets into the support vector machine (SVM) for training and testing by ten-fold cross-validation. The results showed that the sensitivity, specificity, accuracy and Matthews correlation coefficient (MCC) of identifying nucleosome positioning for were 97.1%, 96.9%, 94.2% and 0.89, respectively, and the area under the receiver operating characteristic curve (AUC) was 0.980 1. Compared with another z-curve method, it was found that our method had better identifying effect and each evaluation performance showed better superiority. CSeqFM method was applied to identify nucleosome positioning for other three species, including , and . The results showed that AUCs of the three species were all higher than 0.90, and CSeqFM method also showed better stability and effectiveness compared with iNuc-STNC and iNuc-PseKNC methods, which is further demonstrated that CSeqFM method has strong reliability and good identification performance.
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OBJECTIVE@#To establish a novel method based on three-dimensional (3D) shape analysis and weighted Procrustes analysis (WPA) algorithm to construct a 3D facial symmetry reference plane (SRP), automatically assigning weight to facial anatomical landmarks. The WPA algorithm suitability for commonly observed clinical cases of mandibular deviation were analysed and evaluated.@*METHODS@#Thirty patients with mandibular deviation were recruited for this study. The 3D facial SRPs were extracted independently based on original-mirror alignment method. Thirty-two anatomical landmarks were selected from the overall region by three times to obtain the mean coordinate. The SRP of experimental groups 1 and 2 were using the standard Procrustes analysis (PA) algorithm and WPA algorithm, respectively. A reference plane defined by experts based on regional iterative closest point (ICP) algorithm, served as the ground truth. Three experts manually selecting facial regions with good symmetry for original model, and common region was included in the study. The angle error values between the SRP of WPA algorithm in the experimental group 1 and the truth plane were evaluated in this study, and the SRP of PA algorithm of experimental group 2 was calculated in the same way. Statistics and measurement analysis were used to comprehensively evaluate the clinical suitability of the WPA algorithm to calculate the SRP. A paired t-test analysis (two-tailed) was conducted to compare the angles.@*RESULTS@#The average angle error between the SRP of WPA algorithm and the ground truth was 1.53°±0.84°, which was smaller than that between the SRP of PA and the ground truth (2.06°±0.86°). There were significant differences in the angle errors among the groups (P < 0.05). For the patients with severe mandibular deviation that the distance between pogonion and facial midline greater than 12 mm, the average angle error of the WPA algorithm was 0.86° smaller than that of the PA algorithm.@*CONCLUSION@#The WPA algorithm, based on weighted shape analysis, can provide a more adaptable SRP than the standard PA algorithm when applied to mandibular deviation patients and preliminarily simulate the diagnosis strategies of clinical experts.
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Humans , Algorithms , Cephalometry , Face , Facial Asymmetry , Imaging, Three-DimensionalABSTRACT
In analysis of the genetic diversity on soybean can be used agronomic, morphological and molecular traits, which are subjected to multivariate biometrical analysis. There are different multivariate methodologies available such as Euclidean distance, Mahalanobis distance and different hierarchical methods. However, studies that may assist in the choice of such methods are lacking. The aim of this paper was to evaluate the clustering standards of soybean genotypes using Euclidean and Mahalanobis distances, following different hierarchical methods. The experiment was conducted in "Capim Branco" farm which belongs to the Federal University of Uberlândia and were used a complete randomized block design composed of 15 soybean genotypes (nine breeding lines and six cultivars) and four replications. The agronomic traits evaluated were: number of days to flowering and to maturity, height of the plant at flowering and at maturity, height of the insertion of the first pod, number of nodes on the main stalk in flowering and at maturity, number of grains per pod, total number of pods, severity of Asian rust, number of pustules and yield. The data were submitted to multivariate analysis in GENES program. The Mahalanobis distance or the Euclidean distance obtained by agronomic traits allows the determination of soybean genetic diversity. The use of the Euclidean distance in hierarchical methods allows a greater group differentiation. The UPGMA method and the nearest neighbor method shows a greater accuracy using the Mahalanobis distance and Euclidean distance.
Em estudos de diversidade genética de soja são utilizados caracteres agronômicos, morfológicos e moleculares que, por sua vez, são submetidos às análises biométricas multivariadas. Encontram-se disponíveis diferentes metodologias multivariadas, tais como as a distância Euclidiana, a distância de Mahalanobis e diferentes métodos hierárquicos. No entanto, são escassos os estudos que orientam para uma melhor escolha de tais análises em pesquisas com soja. O objetivo deste trabalho foi avaliar o padrão de agrupamento de genótipos de soja utilizando distância Euclidiana e Mahalanobis, seguindo diferentes métodos hierárquicos. O experimento foi realizado na Fazenda Capim Branco, da Universidade Federal de Uberlândia. Os tratamentos consistiram de 15 genótipos de soja (nove linhagens e seis cultivares) avaliados em delineamento de blocos completos casualizados com quatro repetições. Avaliaram-se os caracteres número de dias para o florescimento e maturidade, altura da planta no florescimento e na maturidade, altura de inserção da primeira vagem, número de nós na haste principal no florescimento e na maturidade, número de vagens com um, dois e três grãos, número total de vagens, produtividade de grãos, severidade da ferrugem asiática e número de pústulas. Os dados foram submetidos a análises multivariadas utilizando o Programa Genes. Tanto a distância generalizada de Mahalanobis como a distância Euclidiana, obtidas com caracteres agronômicos, permitem determinar a diversidade genética em soja. O uso da distância Euclidiana em métodos hierárquicos permite maior diferenciação de grupos. O método UPGMA e o métodos do vizinho mais próximo apresentam maior concordância no agrupamento de genótipos utilizando a distância de Mahalanobis e a distância Euclidiana.
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Soybeans , Genetic Variation , Biometry , GenotypeABSTRACT
Aim To summarize the 2015 version of the prescrip-tion preparations containing Schisandra chinensis in "Chinese Pharmacopoeia",and discover meaningful compatibility law of Schisandra chinensis. Methods The statistics of prescription preparations relating to Schisandra chinensis in 2015 edition of "Chinese Pharmacopoeia" were gathered to find the frequency of each herbal medicine,efficacy,medicine category,and dosage. A database was constructed and frequency statistics were coun-ted,the dendrogram was built by cluster analysis to get compati-bility law of herbal medicines,and then some modern research analysis was conducted. Results A total 100 kinds of prescrip-tion preparations were included,including 128 Chinese medi-cines,and the total using frequency was 906 times. A sum of 17 types of traditional Chinese medicine were used in this study, and most commonly used herbals were Qi-invigorating herbs(fre-quency 150,0. 1656),antipyretic(frequency 115,0. 1269), yin-nourishing herbs(frequency 91,0. 1004),Yang-invigorat-ing herbs(frequency 78,0. 8610),Hematinic(frequency 78, 0. 8610)and so on. The herb medicine of using frequency ranking the first 20 was Prepared Radix Rehmanniae(47),Ra-dix Ophiopogonis (39 ), tuckahoe (38 ), Membranous Milkvetch(36),Ural Licorice (35),ginseng (32),angelica (23),salvia miltiorrhiza(23),wolfberry fruit(21),respective-ly;cluster analysis showed that the traditional Chinese medicine with frequency more than 10 times could be divided into five cat-egories,while Radix Rehmanniae was classified as a separate class. Conclusions The main therapeutic theory about Schisan-dra is astringency,replenishing and promoting production of body fluid and tonifying the kidney to relieve mental strain in 2015 edition of "Chinese Pharmacopoeia". The prescription compatibility can be used for rational medicine Schisandra com-patibility,guiding rational administration for Schisandra chinen-sis,in-depth research and development of modern prescription provide reference.
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BACKGROUND: This study purposed to analyze and understand how spatial accessibility of patients influenced the number of outpatient visits for the internal medicine of a hospital. METHODS: A hospital with 100 beds in Seoul, South Korea provided data from 2013 January 1 to 2013 June 30. Euclidean distance and road ares were used to represent the spatial accessibility. Patient level data and dong level data were collected and used in spatial analysis. Dong level data was converted into grid level (500×500 m) for the multivariate analysis. Hot-spot analysis and generalized linear model were applied to the data collected. RESULTS: Hot-spots of outpatient visits were found around the study hospital, and cold-spots were not found. Number of outpatient visits was varied by the distance between patient resident and hospitals, and about 80% of total outpatient visits was occurred in within the 5 km from study hospital, and 50% was occurred in within 1.6 km. Spatial accessibility had significant influences on the outpatient visits. CONCLUSION: Findings provide evidences that spatial accessibility had influences on the patients' behaviors in utilizing the outpatient care of internal medicine in a hospital. Results can provide useful information to health policy makers as well as hospital managers for their decision making.
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Humans , Ambulatory Care , Decision Making , Health Policy , Internal Medicine , Korea , Linear Models , Multivariate Analysis , Outpatients , Seoul , Spatial AnalysisABSTRACT
Morphometric approaches can be combined with 2D or 3D imaging to quantitatively evaluate craniofacial medical conditions depicted in material culture and to learn more about the culture being studied. A terra-cotta figurine (circa 500 A.D.) from the Tolteca culture of Mexico has previously been qualitatively "diagnosed" with Down syndrome (DS) based on the presence or absence of facial features typically associated with trisomy 21. The purpose of this research is to quantitatively test the hypothesis that the Tolteca figurine exhibits facial features consistent with DS. Landmarks (n = 24) were acquired from sex- and age-matched (5-20 yrs) facial images of DS individuals (n = 32), euploid individuals (n = 32), and the Tolteca figurine. Landmark coordinates were subjected to geometric morphometric analyses, and the results suggest that the Tolteca figurine displays facial morphology consistent with DS.
Con el objetivo de evaluar cuantitativamente las complejas condiciones medicas craneofaciales, se pueden combinar los enfoques morfométricos con imágenes 2D o 3D representadas en la cultura material, para un mayor conocimiento referente al estudio cultural. Una figura de terracota (alrededor del 500 DC) de la cultura Tolteca de México ha sido previamente y cualitativamente "diagnosticada" con Síndrome de Down en base a la presencia o ausencia de rasgos faciales típicamente asociados con trisomía 21. El propósito de esta investigación fue comprobar cuantitativamente la hipótesis de que esta figura de la cultura Tolteca exhibe rasgos faciales consistentes con Síndrome de Down. Se identificaron puntos de referencia similares (n = 24) según sexo y edad (5-20 años) a imágenes faciales de individuos con Síndrome de Down (n = 32), individuos euploides (n = 32) y de la figura Tolteca. Los puntos de referencia fueron sometidos a un análisis morfométrico geométrico, y los resultados sugieren que la morfología facial de la figura Tolteca es consistente con el Síndrome de Down.
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Humans , Male , Female , Child, Preschool , Child , Adolescent , Young Adult , Sculpture , Down Syndrome , Face/anatomy & histology , Principal Component Analysis , Anatomic Landmarks , Mexico , Models, AnatomicABSTRACT
Maytenus ilicifolia e M. aquifolium são espécies nativas do Brasil, popularmente conhecidas como espinheira-santa, sendo indicadas para gastrite e para úlcera estomacal. A Embrapa Clima Temperado e a Universidade Federal de Pelotas (UFPel) mantêm um banco de germoplasma destas espécies. Com o objetivo de identificar a variabilidade fenotípica para alguns caracteres morfológicos em matrizes de espinheira-santa, estimar a dissimilaridade e agrupar os acessos através de análises multivariadas, 105 acessos foram caracterizados morfologicamente. Foram avaliados os caracteres comprimento e largura de fruto, número de sementes por fruto, comprimento e largura de folha, relação comprimento/largura de folha e número de espinhos por folha. Foi estimada a distância euclidiana e os acessos foram agrupados pelo método de otimização de Tocher. Foi observada uma ampla variabilidade para todos os caracteres analisados. O número de espinhos por folha foi o caráter que mais contribuiu para a divergência. Os caracteres morfológicos permitiram separar os acessos em sete grupos. A maior dissimilaridade foi entre os acessos 57 (M. ilicifolia) e 91 (M. aquifolium). Não foi evidenciada uma separação de acordo com a localização geográfica dos acessos. Na análise de agrupamento foram identificados dois grupos que apresentavam tanto acessos de M. ilicifolia quanto de M. aquifolium, o que indica proximidade filogenética entre estas espécies.
Maytenus ilicifolia and M. aquifolium are native Brazilian species popularly known as espinheira-santa, being indicated for gastritis and stomach ulcer. Embrapa Clima Temperado and Universidade Federal de Pelotas (UFPel) keep a gene bank of these species. With the objective of identifing phenotypic variability for some morphological characters in matrices of espinheira-santa, estimating dissimilarity and clustering accessions through multivariate analysis, 105 accessions had been morphologically characterized. The characteristics evaluated were fruit length, fruit width, number of seeds per fruit, leaf length, leaf width, leaf length/leaf width ratio and number of thorns per leaf. The euclidean distance was estimated and accessions were clustered by Tocher optimization method. A wide variability for all the characteristics analyzed was observed. The number of thorns per leaf was the characteristics that more contributed to the divergence. The morphological characteristics enabled to separate the accesses in seven clusters. The higher dissimilarity was between accessions 57 (M. ilicifolia) and 91 (M. aquifolium). There was no evidence of a separation in accordance to the geographic localization of the accessions. In the clustering analysis were identified two clusters that had accessions of both species, M. ilicifolia and M. aquifolium, indicating phylogenetic relatedness between these species.
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Fast and accurate computation of the Euclidean distance map transformation is presented using the python programming language in conjunction with the vtk and itk toolkits. Two algorithms are compared on the basis of their efficiency and computational speed; Saitho algorithm and Danielsson's four-points Sequential Euclidean Distance (4SED). An algorithm is used to compute a scalar distance map from a 3D data set or volume, which can be used to extract specific distance values. The performance time for the Saitho computation speed was less than the Danielsson's 4SED computation allowing a faster calculation of the Euclidean distance map. A software analysis application was implemented using the Saitho algorithm for the computation of the scalar distance maps; it also included an underlying segmentation method to allow the computation of Euclidean distance maps on micro-CT images of segmented bone structures. In the future, this application could be used in conjunction with other image processing software applications of bone analysis.
Se implementó una aplicación utilizando el lenguaje de programación Phyton y las librerías ITK y VTK para un cálculo rápido y preciso de la transformada Euclidiana de distancia. Se compararon dos algoritmos, el propuesto por Saitho y el algoritmo de Danielsson en la versión four-points Sequencial Euclidean distance (4SED). Se evaluó la precisión y la velocidad computacional de ambos algoritmos, encontrando que la versión propuesta por Saitho es más rápida. Se implementó una aplicación de software para el cálculo de la transformada Euclidiana de distancia, incluyendo herramientas para la segmentacion de imágenes de micro-CT de estructuras óseas. A futuro esta aplicación puede ser usada en conjunto con otros software para análisis de imágenes en el procesamiento de estructuras oseas.
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Objective: To evaluate differences in dental arch forms between the subjects with Angle II division 1(AngleⅡ1 ) and those with normal occlusion. Methods:60 AngleⅡ1 patients and 60 normal occlusion subjects aged 13-17 years old were selected. Fourteen landmarks, corresponding to the cusp tips and incisor edges, were identified on the upper and lower dental casts of all subjects by YM-21115 three dimension measuring machine. Arch form differences between AngleⅡ1 and normal occlusion subjects were assessed by Euclidean distance matrix analysis (EDMA). Results:(1) In both sexes, the upper arch of AngleⅡ1 subjects was larger than that of normal occlusion (1.8% for females and 2.7% for males); and arch shape difference was also significantly different(P